plot_anatomy: Plot root anatomy

In granar/granar: Generator of Root ANAtomy in R

Plot root anatomy

Description

This function plot the results of a 2D root cross section anatomy simulation

Usage

plot_anatomy(sim = NULL, col = "type", leg = T, apo_bar = 0, phi_thck = 0)

Arguments

sim	the simulation objkect, returned by 'create_anatomy.R'
col	Parameter to choose for the coloring of the cells. Accepted arguments are 'type', 'area', 'dist', 'id_cell', "segment' and 'angle'. Default = 'type'
leg	Display the legend; Default= TRUE
apo_bar	Display apolastic barrier when col = "segment". 1 endodermal casparian strip, 2 fully suberized endodermis, 3 fully suberized endodermis and an exodermal casparian strip, and 4 exodermis and endodermis are fully suberized.
phi_thck	Display phi thickening on the defined number of layer after the endodermis

Examples

# sim = create_anatomy(path = "PATH_TO_XLM_FILE")
# plot_anatomy(sim, col = "type")
# plot_anatomy(sim, col = "segment", apo_bar = 3)

granar/granar documentation built on Feb. 29, 2024, 3:58 p.m.