ComputeR0: Compute empirically adjusted reproductive number curves for a...
In grantbrown/ABSEIR: Posterior Approximation to Fully Bayesian Spatial SEIR Models Using Multithreaded C++
Description
Usage
Arguments
Details
Examples
Description
Compute empirically adjusted reproductive number curves for a PosteriorSimulation object
Usage
1
ComputeR0(SimObject, cores = 1)
Arguments
SimObject
a PosteriorSimulation object, as created by the epidemic.simulations function.
cores
Optional argument - use multiple cores?
Details
The main SpatialSEIRModel functon performs many simulations, but for the sake of
memory efficiency and runtime does not return the simulated compartment values
to the user. If simulated epidemics are desired, they may be quickly and
easily generated using the epidemic.simulations function.
Reproductive number estimation is performed using this function, as the
calculations are somewhat computationally intensive and may not be required by
all users.
Examples
1
2
3
## Not run: r0 <- ComputeR0(epidemic.simulations(modelObject, replicates = 10,
verbose = TRUE))
## End(Not run)
grantbrown/ABSEIR documentation built on Oct. 14, 2021, 2:32 p.m.
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Description Usage Arguments Details Examples
Description
Compute empirically adjusted reproductive number curves for a PosteriorSimulation object
Usage
1 | ComputeR0(SimObject, cores = 1)
|
Arguments
SimObject |
a PosteriorSimulation object, as created by the |
cores |
Optional argument - use multiple cores? |
Details
The main SpatialSEIRModel functon performs many simulations, but for the sake of
memory efficiency and runtime does not return the simulated compartment values
to the user. If simulated epidemics are desired, they may be quickly and
easily generated using the epidemic.simulations function.
Reproductive number estimation is performed using this function, as the
calculations are somewhat computationally intensive and may not be required by
all users.
Examples
1 2 3 | ## Not run: r0 <- ComputeR0(epidemic.simulations(modelObject, replicates = 10,
verbose = TRUE))
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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