geom_shady_smooth: iterate adding ribbons to a ggplot2 plot at varying...

Description Usage Arguments Examples

View source: R/feedback_plotting.R

Description

iterate adding ribbons to a ggplot2 plot at varying confidence levels to shade by confidence. Horribly inefficient, because smooth stat is computed every time, but flexible.

Usage

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geom_shady_smooth(mapping = NULL, data = NULL, stat = "smooth",
  method = "auto", formula = y ~ x, se = TRUE, position = "identity",
  na.rm = FALSE, show.legend = NA, inherit.aes = TRUE, levels = c(0.6,
  0.8, 0.95), base_alpha = 1, fill_gradient = NULL, fill = "black", ...)

Arguments

mapping

Set of aesthetic mappings created by aes or aes_. If specified and inherit.aes = TRUE (the default), it is combined with the default mapping at the top level of the plot. You must supply mapping if there is no plot mapping.

data

The data to be displayed in this layer. There are three options:

If NULL, the default, the data is inherited from the plot data as specified in the call to ggplot.

A data.frame, or other object, will override the plot data. All objects will be fortified to produce a data frame. See fortify for which variables will be created.

A function will be called with a single argument, the plot data. The return value must be a data.frame., and will be used as the layer data.

stat

defaults to smooth

method

smoothing method (function) to use, eg. "lm", "glm", "gam", "loess", "rlm".

For method = "auto" the smoothing method is chosen based on the size of the largest group (across all panels). loess is used for than 1,000 observations; otherwise gam is used with formula = y ~ s(x, bs = "cs"). Somewhat anecdotally, loess gives a better appearance, but is O(n^2) in memory, so does not work for larger datasets.

formula

formula to use in smoothing function, eg. y ~ x, y ~ poly(x, 2), y ~ log(x)

se

display confidence interval around smooth? (TRUE by default, see level to control

position

Position adjustment, either as a string, or the result of a call to a position adjustment function.

na.rm

If FALSE, the default, missing values are removed with a warning. If TRUE, missing values are silently removed.

show.legend

logical. Should this layer be included in the legends? NA, the default, includes if any aesthetics are mapped. FALSE never includes, and TRUE always includes.

inherit.aes

If FALSE, overrides the default aesthetics, rather than combining with them. This is most useful for helper functions that define both data and aesthetics and shouldn't inherit behaviour from the default plot specification, e.g. borders.

levels

the confidence levels that are supposed to be displayed, defaults to 0.6, 0.8, 0.95

base_alpha

divided by length(levels)

fill_gradient

a vector of colors that has at least the same length as levels. Color each ribbon differently

fill

a single color for the ribbon

...

everything else is passed to and documented in ggplot2::geom_smooth()

Examples

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data(beavers)
plot = ggplot2::ggplot(beaver1, ggplot2::aes(time, temp))
plot + geom_shady_smooth() + ggplot2::facet_wrap(~ day)
plot + geom_shady_smooth(fill = 'blue', levels = seq(0.05,0.95,0.1))
plot + geom_shady_smooth(size = 0.1, fill = '#49afcd', levels = seq(0.1,0.8,0.01))
plot + geom_shady_smooth(fill_gradient = c('red', 'orange', 'yellow'), base_alpha = 3)

grebbel/formr_test documentation built on May 17, 2019, 8:34 a.m.