gi2gl: Converts a genind object into a genlight object

In green-striped-gecko/dartR: Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis

Converts a genind object into a genlight object

Description

Converts a genind object into a genlight object

Usage

gi2gl(gi, parallel = FALSE, verbose = NULL)

Arguments

gi	A genind object [required].
parallel	Switch to deactivate parallel version. It might not be worth to run it parallel most of the times [default FALSE].
verbose	Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log ; 3, progress and results summary; 5, full report [default 2].

Details

Be aware due to ambiguity which one is the reference allele a combination of gi2gl(gl2gi(gl)) does not return an identical object (but in terms of analysis this conversions are equivalent)

Value

A genlight object, with all slots filled.

Author(s)

Bernd Gruber (Post to https://groups.google.com/d/forum/dartr)

green-striped-gecko/dartR documentation built on June 9, 2025, 1:44 a.m.