Files in green-striped-gecko/dartR
Importing and Analysing SNP and Silicodart Data Generated by Genome-Wide Restriction Fragment Analysis

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/datasets.r R/gi2gl.R R/gl.Ho.r R/gl.Hs.r R/gl.alf.r R/gl.amova.r R/gl.assign.r R/gl.basic.stats.r R/gl.collapse.pval.r R/gl.collapse.r R/gl.collapse.recursive.r R/gl.costdistances.r R/gl.define.pop.r R/gl.dist.pop.r R/gl.diversity.r R/gl.drop.ind.r R/gl.drop.loc.r R/gl.drop.pop.r R/gl.edit.recode.ind.r R/gl.edit.recode.pop.r R/gl.filter.callrate.r R/gl.filter.cloneid.r R/gl.filter.hamming.r R/gl.filter.hwe.r R/gl.filter.maf.r R/gl.filter.monomorphs.r R/gl.filter.rdepth.r R/gl.filter.repavg.r R/gl.filter.secondaries.r R/gl.fixed.diff.r R/gl.fst.pop.r R/gl.gene.freq.r R/gl.genleastcost.r R/gl.grm.network.r R/gl.grm.r R/gl.hwe.pop.r R/gl.ibd.r R/gl.keep.ind.r R/gl.keep.pop.r R/gl.make.recode.ind.r R/gl.make.recode.pop.r R/gl.map.interactive.r R/gl.merge.pop.r R/gl.nhybrids.r R/gl.outflank.r R/gl.pcoa.plot.3d.r R/gl.pcoa.plot.r R/gl.pcoa.pop.r R/gl.pcoa.r R/gl.pcoa.scree.r R/gl.percent.freq.r R/gl.plot.heatmap.r R/gl.plot.network.r R/gl.plot.r R/gl.read.csv.r R/gl.read.dart.2row.r R/gl.read.dart.r R/gl.read.silicodart.r R/gl.recalc.metrics.r R/gl.recode.ind.r R/gl.recode.pop.r R/gl.report.bases.r R/gl.report.callrate.r R/gl.report.hamming.r R/gl.report.heterozygosity.r R/gl.report.hwe.r R/gl.report.ld.r R/gl.report.maf.r R/gl.report.monomorphs.r R/gl.report.pa.pop.r R/gl.report.pa.r R/gl.report.rdepth.r R/gl.report.repavg.r R/gl.report.secondaries.r R/gl.sexlinkage.r R/gl.sim.ind.r R/gl.sim.offspring.r R/gl.subsample.loci.r R/gl.tree.nj.r R/gl.utils.fdsim.r R/gl.write.csv.r R/gl2bayescan.r R/gl2demerelate.r R/gl2fasta.r R/gl2faststructure.r R/gl2gds.r R/gl2genalex.r R/gl2gi.r R/gl2phylip.r R/gl2plink.r R/gl2sa.r R/gl2shp.R R/gl2snapp.r R/gl2structure.r R/gl2svdquartets.r R/gl2treemix.r R/imports.r R/is.fixed.r R/prob.hwe.r R/util.outflank.diploids.r R/util.outflank.fst.r R/util.outflank.likelihood.r R/util.outflank.plotter.r R/util.outflank.r R/utils.dart2genlight.r R/utils.hamming.r R/utils.hwe.r R/utils.read.dart.r R/utils.recalc.avgpic.r R/utils.recalc.callrate.r R/utils.recalc.freqhets.r R/utils.recalc.freqhomref.r R/utils.recalc.freqhomsnp.r R/utils.recalc.maf.r R/utils.subsample.loci.r README.md
dartR.Rproj
data/bandicoot.rda
data/possums.gl.rda
data/testset.gl.rda
inst/extdata/landscape.sim.rdata
inst/extdata/platy.csv
inst/extdata/testset_SNPs_2Row.csv
inst/extdata/testset_metadata.csv
inst/extdata/testset_pop_recode.csv
man/bandicoot.gl.Rd man/gi2gl.Rd man/gl.Ho.Rd man/gl.Hs.Rd man/gl.alf.Rd man/gl.amova.Rd man/gl.assign.Rd man/gl.basic.stats.Rd man/gl.collapse.Rd man/gl.collapse.pval.Rd man/gl.collapse.recursive.Rd man/gl.costdistances.Rd man/gl.define.pop.Rd man/gl.dist.pop.Rd man/gl.diversity.Rd man/gl.drop.ind.Rd man/gl.drop.loc.Rd man/gl.drop.pop.Rd man/gl.edit.recode.ind.Rd man/gl.edit.recode.pop.Rd man/gl.filter.callrate.Rd man/gl.filter.cloneid.Rd man/gl.filter.hamming.Rd man/gl.filter.hwe.Rd man/gl.filter.maf.Rd man/gl.filter.monomorphs.Rd man/gl.filter.rdepth.Rd man/gl.filter.repavg.Rd man/gl.filter.secondaries.Rd man/gl.fixed.diff.Rd man/gl.fst.pop.Rd man/gl.gene.freq.Rd man/gl.genleastcost.Rd man/gl.grm.Rd man/gl.grm.network.Rd man/gl.hwe.pop.Rd man/gl.ibd.Rd man/gl.keep.ind.Rd man/gl.keep.pop.Rd man/gl.make.recode.ind.Rd man/gl.make.recode.pop.Rd man/gl.map.interactive.Rd man/gl.merge.pop.Rd man/gl.nhybrids.Rd man/gl.outflank.Rd man/gl.pcoa.Rd man/gl.pcoa.plot.3d.Rd man/gl.pcoa.plot.Rd man/gl.pcoa.pop.Rd man/gl.pcoa.scree.Rd man/gl.percent.freq.Rd man/gl.plot.Rd man/gl.plot.heatmap.Rd man/gl.plot.network.Rd man/gl.read.csv.Rd man/gl.read.dart.2row.Rd man/gl.read.dart.Rd man/gl.read.silicodart.Rd man/gl.recalc.metrics.Rd man/gl.recode.ind.Rd man/gl.recode.pop.Rd man/gl.report.bases.Rd man/gl.report.callrate.Rd man/gl.report.hamming.Rd man/gl.report.heterozygosity.Rd man/gl.report.hwe.Rd man/gl.report.ld.Rd man/gl.report.maf.Rd man/gl.report.monomorphs.Rd man/gl.report.pa.Rd man/gl.report.pa.pop.Rd man/gl.report.rdepth.Rd man/gl.report.repavg.Rd man/gl.report.secondaries.Rd man/gl.sexlinkage.Rd man/gl.sim.ind.Rd man/gl.sim.offspring.Rd man/gl.subsample.loci.Rd man/gl.tree.nj.Rd man/gl.utils.fdsim.Rd man/gl.write.csv.Rd man/gl2bayescan.Rd man/gl2demerelate.Rd man/gl2fasta.Rd man/gl2faststructure.Rd man/gl2gds.Rd man/gl2genalex.Rd man/gl2gi.Rd man/gl2phylip.Rd man/gl2plink.Rd man/gl2sa.Rd man/gl2shp.Rd man/gl2snapp.Rd man/gl2structure.Rd man/gl2svdquartets.Rd man/gl2treemix.Rd man/is.fixed.Rd man/platy.Rd man/possums.gl.Rd man/prob.hwe.Rd man/testset.gl.Rd man/testset_SNPs_2Row.Rd man/testset_metadata.Rd man/testset_pop_recode.Rd man/util.outflank.MakeDiploidFSTMat.Rd man/util.outflank.Rd man/util.outflank.plotter.Rd man/utils.dart2genlight.Rd man/utils.hamming.Rd man/utils.hwe.Rd man/utils.read.dart.Rd man/utils.recalc.avgpic.Rd man/utils.recalc.callrate.Rd man/utils.recalc.freqhets.Rd man/utils.recalc.freqhomref.Rd man/utils.recalc.freqhomsnp.Rd man/utils.recalc.maf.Rd man/utils.subsample.loci.Rd vignettes/IntroTutorial_dartR.Rmd
vignettes/box2.tex
vignettes/figures/dartRlogo.png
vignettes/figures/dartdata.png
vignettes/figures/dialog_question.png
vignettes/figures/ggplotly.png
vignettes/figures/penguin_task.png
vignettes/figures/plot3d.png
vignettes/figures/tux_info.png
green-striped-gecko/dartR documentation built on March 25, 2019, 5:28 p.m.