gl.merge.pop: Merges two or more populations in a genlight object into one...
In green-striped-gecko/dartR: Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis
gl.merge.pop R Documentation
Merges two or more populations in a genlight object into one population
Description
Individuals are assigned to populations based on the specimen metadata data
file (csv) used with gl.read.dart().
This script assigns individuals from two nominated populations into a new
single population. It can also be used to rename populations.
The script returns a genlight object with the new population assignments.
Usage
gl.merge.pop(x, old = NULL, new = NULL, verbose = NULL)
Arguments
x
Name of the genlight object containing SNP genotypes [required].
old
A list of populations to be merged [required].
new
Name of the new population [required].
verbose
Verbosity: 0, silent or fatal errors; 1, begin and end; 2,
progress log; 3, progress and results summary; 5, full report
[default 2 or as specified using gl.set.verbosity].
Value
A genlight object with the new population assignments.
Author(s)
Custodian: Arthur Georges – Post to
https://groups.google.com/d/forum/dartr
Examples
gl <- gl.merge.pop(testset.gl, old=c('EmsubRopeMata','EmvicVictJasp'), new='Outgroup')
green-striped-gecko/dartR documentation built on Sept. 7, 2024, 4:15 a.m.
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| gl.merge.pop | R Documentation |
Merges two or more populations in a genlight object into one population
Description
Individuals are assigned to populations based on the specimen metadata data file (csv) used with gl.read.dart().
This script assigns individuals from two nominated populations into a new single population. It can also be used to rename populations.
The script returns a genlight object with the new population assignments.
Usage
gl.merge.pop(x, old = NULL, new = NULL, verbose = NULL)
Arguments
x |
Name of the genlight object containing SNP genotypes [required]. |
old |
A list of populations to be merged [required]. |
new |
Name of the new population [required]. |
verbose |
Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2 or as specified using gl.set.verbosity]. |
Value
A genlight object with the new population assignments.
Author(s)
Custodian: Arthur Georges – Post to https://groups.google.com/d/forum/dartr
Examples
gl <- gl.merge.pop(testset.gl, old=c('EmsubRopeMata','EmvicVictJasp'), new='Outgroup')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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