utils.basic.stats: Calculates mean observed heterozygosity, mean expected...
In green-striped-gecko/dartR: Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis
View source: R/utils.basic.stats.r
utils.basic.stats R Documentation
Calculates mean observed heterozygosity, mean expected heterozygosity and Fis
per locus, per population and various population differentiation measures
Description
This is a re-implementation of hierfstat::basics.stats specifically
for genlight objects. Formula (and hence results) match exactly the original
version of hierfstat::basics.stats but it is much faster.
Usage
utils.basic.stats(x, digits = 4)
Arguments
x
A genlight object containing the SNP genotypes [required].
digits
Number of decimals to report [default 4]
Value
A list with with the statistics for each population
Author(s)
Luis Mijangos and Carlo Pacioni (bugs? Post to
https://groups.google.com/d/forum/dartr)
Examples
require("dartR.data")
out <- utils.basic.stats(platypus.gl)
green-striped-gecko/dartR documentation built on Sept. 7, 2024, 4:15 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/utils.basic.stats.r
| utils.basic.stats | R Documentation |
Calculates mean observed heterozygosity, mean expected heterozygosity and Fis per locus, per population and various population differentiation measures
Description
This is a re-implementation of hierfstat::basics.stats specifically
for genlight objects. Formula (and hence results) match exactly the original
version of hierfstat::basics.stats but it is much faster.
Usage
utils.basic.stats(x, digits = 4)
Arguments
x |
A genlight object containing the SNP genotypes [required]. |
digits |
Number of decimals to report [default 4] |
Value
A list with with the statistics for each population
Author(s)
Luis Mijangos and Carlo Pacioni (bugs? Post to https://groups.google.com/d/forum/dartr)
Examples
require("dartR.data")
out <- utils.basic.stats(platypus.gl)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.