platy: Example data set as text file to be imported into a genlight...

In green-striped-gecko/dartR: Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis

Example data set as text file to be imported into a genlight object

Description

Check ?read.genetable in pacakge PopGenReport for details on the format.

Format

csv

Author(s)

Bernd Gruber (bugs? Post to https://groups.google.com/d/forum/dartr

Examples

library(PopGenReport)
read.csv( paste(.libPaths()[1],'/dartR/extdata/platy.csv',sep='' ))
platy <- read.genetable( paste(.libPaths()[1],'/dartR/extdata/platy.csv',
sep='' ), ind=1, pop=2, lat=3, long=4, other.min=5, other.max=6, 
oneColPerAll=FALSE, sep='/')
platy.gl <- gi2gl(platy, parallel=FALSE)
df.loc <- data.frame(RepAvg = runif(nLoc(platy.gl)), CallRate = 1)
platy.gl@other$loc.metrics <- df.loc
gl.report.reproducibility(platy.gl)

green-striped-gecko/dartR documentation built on Sept. 7, 2024, 4:15 a.m.