gl.rename.pop: Renames a population in a genlight object

In green-striped-gecko/dartR: Importing and Analysing 'SNP' and 'Silicodart' Data Generated by Genome-Wide Restriction Fragment Analysis

Renames a population in a genlight object

Description

Individuals are assigned to populations based on the specimen metadata data file (csv) used with gl.read.dart().

This script renames a nominated population.

The script returns a genlight object with the new population name.

Usage

gl.rename.pop(x, old = NULL, new = NULL, verbose = NULL)

Arguments

x	Name of the genlight object containing SNP genotypes [required].
old	Name of population to be changed [required].
new	New name for the population [required].
verbose	Verbosity: 0, silent or fatal errors; 1, begin and end; 2, progress log; 3, progress and results summary; 5, full report [default 2 or as specified using gl.set.verbosity].

Value

A genlight object with the new population name.

Author(s)

Custodian: Arthur Georges – Post to https://groups.google.com/d/forum/dartr

Examples

   gl <- gl.rename.pop(testset.gl, old='EmsubRopeMata', new='Outgroup')

green-striped-gecko/dartR documentation built on Sept. 7, 2024, 4:15 a.m.