effect.sizes: Function to extract species pairwise effect sizes from an...
In griffithdan/cooccur: Probabilistic Species Co-Occurrence Analysis in R

Description Usage Arguments Value Author(s) Examples

Calculate standardized and raw effect sizes from an object of class cooccur.

1	effect.sizes(mod, standardized = TRUE, matrix = FALSE)

`mod`	Object of class `cooccur`.
`standardized`	Logical. Should the effect sizes be standardized?
`matrix`	Logical. Should the effect sizes be returned in a distance matrix? The alternative is a list of pairs.

Returns either a data.frame of species pairs and effects sizes or a distance matrix with the rows and columns ordered from the order of species in the original community data matrix.

Daniel M Griffith

#data(finches)
#cooccur.finches <- cooccur(mat=finches,
#			   type="spp_site",
#			   thresh=FALSE,
#			   spp_names=TRUE)
#effect.sizes(cooccur.finches,matrix=TRUE)