Mixed Effects Model for the analysis of CRISPR screens

Global functions | |
---|---|

.createReferenceFasta | Source code |

.extractGeneSymbol | Source code |

.fitLibGuide.sampleSpecific | Source code |

.fitSampleLibGuide | Source code |

.fixGuideNames | Source code |

.identifyLibFromSample | Source code |

.libFromGuideName | Source code |

.pcaInternal | Source code |

.readSampleSheet | Source code |

.scatterMatrix | Source code |

.selectReference | Source code |

.writeCounts | Source code |

MEMcrispR | Man page |

PanCell.fitModel | Man page |

fitPanCellLibGuide | Source code |

gm_mean | Source code |

memcrispr.align | Man page Source code |

memcrispr.compareControlGuides | Man page Source code |

memcrispr.count | Man page Source code |

memcrispr.fitModel | Man page |

memcrispr.fitModel.mc | Man page |

memcrispr.fitModel.sampleSpecific | Man page |

memcrispr.guideDistribution | Man page Source code |

memcrispr.libraryCounts | Source code |

memcrispr.normalizeBetweenSamples | Man page Source code |

memcrispr.readCounts | Man page Source code |

memcrispr.volcanoPlot | Man page Source code |

normalizeBetweenSamples.old | Man page Source code |

normalizeBetweenSamples.readdepth | Man page Source code |

normalizeWithinSamples | Man page Source code |

print_and_capture | Source code |

readCounts | Source code |

readGuideSequences | Source code |

readGuideSequences2 | Source code |

readGuideSequencesSimple | Source code |

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