MEMcrispR | Mixed Effects Tool for Analysis of CRISPR screens |
memcrispr.align | Align reads to reference |
memcrispr.compareControlGuides | Compare the counts of control guides for all samples in the... |
memcrispr.count | Count occurrences of each guide in aligned data. |
memcrispr.fitModel | fitting the mixed effects model |
memcrispr.fitModel.mc | fitting the mixed effects model |
memcrispr.fitModel.sampleSpecific | fitting the mixed effects model |
memcrispr.guideDistribution | Plot distribution of guide counts |
memcrispr.normalizeBetweenSamples | Normalizing between samples to account for varying total read... |
memcrispr.readCounts | Read text files of counts |
memcrispr.volcanoPlot | Create volcano plot comparing fold-change and p-value for... |
normalizeBetweenSamples.old | Normalizing between samples to account for varying total read... |
normalizeBetweenSamples.readdepth | Normalizing between samples to account for varying total read... |
normalizeWithinSamples | Normalize individual guides within a sample to account for GC... |
PanCell.fitModel | fitting the mixed effects model |
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