Man pages for grimbough/MEMcrispR
Mixed Effects Model for the analysis of CRISPR screens
| MEMcrispR | Mixed Effects Tool for Analysis of CRISPR screens |
| memcrispr.align | Align reads to reference |
| memcrispr.compareControlGuides | Compare the counts of control guides for all samples in the... |
| memcrispr.count | Count occurrences of each guide in aligned data. |
| memcrispr.fitModel | fitting the mixed effects model |
| memcrispr.fitModel.mc | fitting the mixed effects model |
| memcrispr.fitModel.sampleSpecific | fitting the mixed effects model |
| memcrispr.guideDistribution | Plot distribution of guide counts |
| memcrispr.normalizeBetweenSamples | Normalizing between samples to account for varying total read... |
| memcrispr.readCounts | Read text files of counts |
| memcrispr.volcanoPlot | Create volcano plot comparing fold-change and p-value for... |
| normalizeBetweenSamples.old | Normalizing between samples to account for varying total read... |
| normalizeBetweenSamples.readdepth | Normalizing between samples to account for varying total read... |
| normalizeWithinSamples | Normalize individual guides within a sample to account for GC... |
| PanCell.fitModel | fitting the mixed effects model |
