API for grisslab/scClassifR
Pretrained learning models for cell type prediction on single cell RNA-sequencing data
| Global functions | |
|---|---|
| .onAttach | Source code |
| balance_dataset | Man page Source code |
| cell_type | Man page Source code |
| cell_type<- | Man page |
| checkCellTypeValidity | Man page Source code |
| checkClassifierValidity | Man page Source code |
| checkFeaturesValidity | Man page Source code |
| checkObjectValidity | Man page Source code |
| checkPThresValidity | Man page Source code |
| checkParentValidity | Man page Source code |
| check_parent_child_coherence | Man page |
| check_parent_child_coherence,Seurat-method | Man page |
| check_parent_child_coherence,SingleCellExperiment-method | Man page |
| classify_cells | Man page |
| classify_cells,Seurat-method | Man page |
| classify_cells,SingleCellExperiment-method | Man page |
| classify_clust | Man page Source code |
| clf | Man page Source code |
| clf<- | Man page |
| construct_tag_vect | Man page |
| construct_tag_vect,Seurat-method | Man page |
| construct_tag_vect,SingleCellExperiment-method | Man page |
| default_models | Man page |
| delete_model | Man page Source code |
| features | Man page Source code |
| features<- | Man page |
| filter_cells | Man page |
| filter_cells,Seurat-method | Man page |
| filter_cells,SingleCellExperiment-method | Man page |
| load_models | Man page Source code |
| make_prediction | Man page Source code |
| p_thres | Man page Source code |
| p_thres<- | Man page |
| parent | Man page Source code |
| parent<- | Man page |
| plant_tree | Man page Source code |
| plot_roc_curve | Man page Source code |
| process_parent_clf | Man page |
| process_parent_clf,Seurat-method | Man page |
| process_parent_clf,SingleCellExperiment-method | Man page |
| save_new_model | Man page Source code |
| scClassifR | Man page Source code |
| select_features | Man page Source code |
| show,scClassifR-method | Man page |
| simplify_prediction | Man page Source code |
| test_classifier | Man page |
| test_classifier,Seurat,scClassifR-method | Man page |
| test_classifier,SingleCellExperiment,scClassifR-method | Man page |
| test_performance | Man page Source code |
| tirosh_mel80_example | Man page |
| train_classifier | Man page |
| train_classifier,Seurat-method | Man page |
| train_classifier,SingleCellExperiment-method | Man page |
| train_func | Man page Source code |
| transform_to_zscore | Man page Source code |
| verify_parent | Man page Source code |
