interProRecursion: Recursively traverses InterPro entries held in argument...
In groupschoof/AHRD_on_gene_clusters: AHRD.on.gene.clusters assigns human readable descriptions to gene families
Description
Usage
Arguments
Value
Description
Recursively traverses InterPro entries held in argument 'interpro.database'
and finds all entries related to argument 'ipr.id' through relation
'relship.slot'. In case of PARENTS all parents and parents of parents are
returned, in case of CONTAINS all contained and contained in contained are.
Usage
1
2
interProRecursion(ipr.id, relship.slot = "PARENTS",
interpro.database = ipr.db)
Arguments
ipr.i
he InterPro accession to start the recursion from, for example
'IPR000003'
relship.slo
Either 'PARENTS' or 'CONTAINS', default is 'PARENTS'
interpro.databas
The named list containing the parsed contents of
the XML interpro document. See parseInterProXML(...) for details.
Value
A character vector of recursive PARENTS or CONTAINED InterPro
entries for the argument entry 'ipr.id'.
groupschoof/AHRD_on_gene_clusters documentation built on May 17, 2019, 8:38 a.m.
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Description Usage Arguments Value
Description
Recursively traverses InterPro entries held in argument 'interpro.database' and finds all entries related to argument 'ipr.id' through relation 'relship.slot'. In case of PARENTS all parents and parents of parents are returned, in case of CONTAINS all contained and contained in contained are.
Usage
1 2 | interProRecursion(ipr.id, relship.slot = "PARENTS",
interpro.database = ipr.db)
|
Arguments
ipr.i |
he InterPro accession to start the recursion from, for example 'IPR000003' |
relship.slo |
Either 'PARENTS' or 'CONTAINS', default is 'PARENTS' |
interpro.databas |
The named list containing the parsed contents of the XML interpro document. See parseInterProXML(...) for details. |
Value
A character vector of recursive PARENTS or CONTAINED InterPro entries for the argument entry 'ipr.id'.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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