parseInterProXML: Read and parse the InterPro XML database. If you have...
In groupschoof/AHRD_on_gene_clusters: AHRD.on.gene.clusters assigns human readable descriptions to gene families
Description
Usage
Arguments
Value
Examples
Description
Read and parse the InterPro XML database. If you have parallel installed and
sufficient cores, it is highly recommended to use as many cores as you have
to speed up parsing of the InterPro database. Also, save it for later use,
so it does not have to be parsed again. See example for details.
Usage
1
parseInterProXML(path.2.xml, include.abstracts = TRUE)
Arguments
path.2.xml
The file path to the interpro.xml document
include.abstracts
If TRUE the quite long abstract texts will be
added to the result.
Value
A named list of lists, each of which is the result of parsing a
single InterPro XML node with function parseInterProTag(...).
Examples
1
2
3
options("mc.cores"=detectCores())
ipr.db <- parseInterProXML( "./interpro.xml" )
save( ipr.db, file="ipr_db.RData" )
groupschoof/AHRD_on_gene_clusters documentation built on May 17, 2019, 8:38 a.m.
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Description Usage Arguments Value Examples
Description
Read and parse the InterPro XML database. If you have parallel installed and sufficient cores, it is highly recommended to use as many cores as you have to speed up parsing of the InterPro database. Also, save it for later use, so it does not have to be parsed again. See example for details.
Usage
1 | parseInterProXML(path.2.xml, include.abstracts = TRUE)
|
Arguments
path.2.xml |
The file path to the interpro.xml document |
include.abstracts |
If TRUE the quite long abstract texts will be added to the result. |
Value
A named list of lists, each of which is the result of parsing a
single InterPro XML node with function parseInterProTag(...).
Examples
1 2 3 | options("mc.cores"=detectCores())
ipr.db <- parseInterProXML( "./interpro.xml" )
save( ipr.db, file="ipr_db.RData" )
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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