Files in groupschoof/PhyloFun

Annotates Proteins with Gene Ontology (GO) Terms

.gitignore

DESCRIPTION

NAMESPACE

R/domainArchitectureSimilarity.R R/domainArchitectureSimilarityRedis.R R/evaluation.R R/geneOntologySQL.R R/loadUniprotKBEntries.R R/measureDistanceFunctions.R R/phyloFun.R R/phyloFunTools.R R/plot.R R/rcppPhyloFun.R R/treeBuilder.R R/zzz.R

README.textile

data/go_term_mutation_prob_distribs.RData

data/ukb_proteins_with_trusted_go_annos.RData

exec/downloadInterProAnnos.R exec/downloadUniprotSeqs.R exec/initializeMeasureDistances.R exec/loadPartialDistanceMatricesIntoRedis.R exec/measureDistances.R exec/measureDistancesFix.R exec/measureDistancesRedis.R exec/runPhyloFun.R exec/testDomainArchitectureSimilarity.R exec/testDomainArchitectureSimilarityRedis.R exec/testEvaluation.R exec/testLoadUniprotKBEntries.R exec/testMeasureDistanceFunctions.R exec/testPhyloFun.R exec/testPhyloFunTools.R exec/testRunPhyloFun.R exec/testTreeBuilder.R

inst/550_exp_ver_accs.txt

inst/A0AEI7.xml

inst/Q9ZZX1.xml

inst/Query_Q9NTK1_phyloFun_annotations_serialized.txt

inst/aa_seqs_with_u.fasta

inst/blast2GO.annot

inst/domainWeights.tbl

inst/domain_weights_database.tbl

inst/domain_weights_database_test.tbl

inst/interproscan_out.tsv

inst/jackhmmer_out_10_prots.tbl

inst/measureDistanceFunctions.fasta

inst/non_unique_hmlgs.fasta

inst/p_mutation_das_distance_R_serialized.txt

inst/p_mutation_sequence_distance_R_serialized.txt

inst/phmmer_out.tbl

inst/prot_pairs.tbl

inst/protein_1.fasta

inst/protein_1_blastout.tbl

inst/protein_1_jackhmmer_out.tbl

inst/testDomainArchitectureSpaceDistanceMatrix.txt

inst/testDomainArchitectureSpaceVectors.txt

inst/test_annotations.tbl

inst/test_annotations_2.tbl

inst/test_blast_results.tbl

inst/test_go_type_annotations_R_serialized.txt

inst/test_msa.fasta

inst/test_msa_empty.fasta

inst/test_msa_equal_A.fasta

inst/test_msa_equal_B.fasta

inst/test_msa_equal_C.fasta

inst/test_msa_good.fasta

inst/test_phyloFun_serialized_result.bin

inst/test_phylo_fun_predictions.tbl

inst/test_tree.newick

inst/test_tree_4_branch_lengths.newick

inst/test_tree_large.newick

inst/test_tree_unreachbl_stts.newick

inst/ukb_proteins_with_trusted_go_annos.fasta.bz2

inst/uniprotkb_based_domain_weights.tbl

inst/uniprotkb_test.fasta

inst/uniprotkb_test_accessions.txt

inst/uniprotkb_test_function_annotations.r_serialized.txt

man/PhyloFun-package.Rd man/rcpp_hello_world.Rd

src/Makevars

src/Makevars.win

src/rcpp_phylo_fun.cpp

src/rcpp_phylo_fun.h

todos.textile

groupschoof/PhyloFun documentation built on May 17, 2019, 8:38 a.m.