Man pages for grunwaldlab/effectR
Predicts Oomycete Effectors
| candidate.rxlr | An example of 'effector.summary' output |
| effector.summary | Returns non-redundant sequences from hmm.search or... |
| effectR | effectR: An R Package to Call Oomycete Effectors |
| fasta_to_stockholm | Converts FASTA to STOCKHOLM |
| get_hmmer_path | Check if HMMER is installed and return path |
| get_mafft_path | Check if MAFFT is installed and return path |
| hmm.logo | Plots the relative frequencies of each position for... |
| hmm.search | Searching for motifs using HMM searches |
| regex.search | Searching for motifs using regular expressions (REGEX) |
| shiny.effectR | Function to run the effectR package using a shiny app |
