Files in grunwaldlab/effectR
Predicts Oomycete Effectors

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md R/datasets.R R/effector.summary.R R/hmm.logo.R R/hmm.search.R R/internal.R R/package.R R/regex.search.R R/shiny.effectR.R README.md cran-comments.md
data/candidate_rxlr.RData
effectR.Rcheck/00_pkg_src/effectR/DESCRIPTION
effectR.Rcheck/00_pkg_src/effectR/NAMESPACE
effectR.Rcheck/00_pkg_src/effectR/NEWS.md effectR.Rcheck/00_pkg_src/effectR/R/datasets.R effectR.Rcheck/00_pkg_src/effectR/R/effector.summary.R effectR.Rcheck/00_pkg_src/effectR/R/hmm.logo.R effectR.Rcheck/00_pkg_src/effectR/R/hmm.search.R effectR.Rcheck/00_pkg_src/effectR/R/internal.R effectR.Rcheck/00_pkg_src/effectR/R/package.R effectR.Rcheck/00_pkg_src/effectR/R/regex.search.R effectR.Rcheck/00_pkg_src/effectR/R/shiny.effectR.R effectR.Rcheck/00_pkg_src/effectR/README.md
effectR.Rcheck/00_pkg_src/effectR/build/vignette.rds
effectR.Rcheck/00_pkg_src/effectR/data/candidate_rxlr.RData
effectR.Rcheck/00_pkg_src/effectR/inst/doc/effectR.R effectR.Rcheck/00_pkg_src/effectR/inst/doc/effectR.Rmd
effectR.Rcheck/00_pkg_src/effectR/inst/doc/effectR.html
effectR.Rcheck/00_pkg_src/effectR/inst/extdata/Alin_infestans.fasta
effectR.Rcheck/00_pkg_src/effectR/inst/extdata/REGEX.fasta
effectR.Rcheck/00_pkg_src/effectR/inst/extdata/test_infestans.fasta
effectR.Rcheck/00_pkg_src/effectR/inst/shiny/Examples/test_infestans.fasta
effectR.Rcheck/00_pkg_src/effectR/inst/shiny/Files/AA.fasta
effectR.Rcheck/00_pkg_src/effectR/inst/shiny/server.R effectR.Rcheck/00_pkg_src/effectR/inst/shiny/ui.R effectR.Rcheck/00_pkg_src/effectR/man/candidate.rxlr.Rd effectR.Rcheck/00_pkg_src/effectR/man/effectR.Rd effectR.Rcheck/00_pkg_src/effectR/man/effector.summary.Rd effectR.Rcheck/00_pkg_src/effectR/man/fasta_to_stockholm.Rd effectR.Rcheck/00_pkg_src/effectR/man/get_hmmer_path.Rd effectR.Rcheck/00_pkg_src/effectR/man/get_mafft_path.Rd effectR.Rcheck/00_pkg_src/effectR/man/hmm.logo.Rd effectR.Rcheck/00_pkg_src/effectR/man/hmm.search.Rd effectR.Rcheck/00_pkg_src/effectR/man/regex.search.Rd effectR.Rcheck/00_pkg_src/effectR/man/shiny.effectR.Rd effectR.Rcheck/00_pkg_src/effectR/tests/testthat.R effectR.Rcheck/00_pkg_src/effectR/tests/testthat/test_HMM.R effectR.Rcheck/00_pkg_src/effectR/tests/testthat/test_HMM_logo.R effectR.Rcheck/00_pkg_src/effectR/tests/testthat/test_effector_summary.R effectR.Rcheck/00_pkg_src/effectR/tests/testthat/test_regex.R effectR.Rcheck/00_pkg_src/effectR/vignettes/effectR.Rmd
effectR.Rcheck/00check.log
effectR.Rcheck/R_check_bin/R
effectR.Rcheck/R_check_bin/Rscript
effectR.Rproj
inst/extdata/Alin_infestans.fasta
inst/extdata/REGEX.fasta
inst/extdata/test_infestans.fasta
inst/shiny/Examples/test_infestans.fasta
inst/shiny/Files/AA.fasta
inst/shiny/Shiny_Pipeline.Rproj
inst/shiny/server.R inst/shiny/ui.R
man/.Rapp.history
man/candidate.rxlr.Rd man/effectR.Rd man/effector.summary.Rd man/fasta_to_stockholm.Rd man/get_hmmer_path.Rd man/get_mafft_path.Rd man/hmm.logo.Rd man/hmm.search.Rd man/regex.search.Rd man/shiny.effectR.Rd tests/testthat.R tests/testthat/test_HMM.R tests/testthat/test_HMM_logo.R tests/testthat/test_effector_summary.R tests/testthat/test_regex.R vignettes/effectR.Rmd
grunwaldlab/effectR documentation built on Oct. 2, 2018, 9:23 p.m.