Man pages for grunwaldlab/effectR
Predicts Oomycete Effectors

candidate.rxlrAn example of 'effector.summary' output
effector.summaryReturns non-redundant sequences from hmm.search or...
effectReffectR: An R Package to Call Oomycete Effectors
fasta_to_stockholmConverts FASTA to STOCKHOLM
get_hmmer_pathCheck if HMMER is installed and return path
get_mafft_pathCheck if MAFFT is installed and return path
hmm.logoPlots the relative frequencies of each position for...
hmm.searchSearching for motifs using HMM searches
regex.searchSearching for motifs using regular expressions (REGEX)
shiny.effectRFunction to run the effectR package using a shiny app
grunwaldlab/effectR documentation built on Oct. 2, 2018, 9:23 p.m.