Files in grunwaldlab/poppr
Genetic Analysis of Populations with Mixed Reproduction
.Rbuildignore
.github/.gitignore
.github/FUNDING.yml
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
.travis.yml
CODE_OF_CONDUCT.md
CONTRIBUTING.md
CRAN-RELEASE
CRAN-SUBMISSION
DESCRIPTION
ISSUE_TEMPLATE.md
Makefile
NAMESPACE
NEWS.md
R/.gitignore
R/Index_calculations.r
R/aaaMLGclass.R
R/aaaMLGmethods.R
R/amova.r
R/bitwise.r
R/bootstraping.R
R/bruvo.r
R/check_data.R
R/classes.r
R/data_subset.r
R/distances.r
R/file_handling.r
R/filter_stats.R
R/global_memory.r
R/ia_jackknife.R
R/imsn.R
R/internal.r
R/internal_methods.R
R/messages.r
R/methods.r
R/mlg.r
R/msn_handlers.R
R/pipe.R
R/poppr.R
R/print_methods.r
R/round_robin.R
R/sample_schemes.r
R/upgma.R
R/visualizations.r
R/zzz.r
README.md
_pkgdown.yml
appveyor.yml
cran-comments.md
data/Aeut.rda
data/Pinf.rda
data/Pram.rda
data/monpop.rda
data/old_Pinf.rda
data/old_partial_clone.rda
data/partial_clone.rda
inst/CITATION
inst/files/rootrot.csv
inst/files/rootrot2.csv
inst/files/simulated.dat
inst/shiny/msn_explorer/server.R
inst/shiny/msn_explorer/ui.R
inst/shiny/utils.R
man/Aeut.Rd
man/MLG-accessors.Rd
man/MLG-class.Rd
man/MLG-method.Rd
man/Pinf.Rd
man/Pram.Rd
man/aboot.Rd
man/bitwise.dist.Rd
man/bitwise.ia.Rd
man/boot.ia.Rd
man/bootgen-class.Rd
man/bootgen-methods.Rd
man/bruvo.boot.Rd
man/bruvo.dist.Rd
man/bruvo.msn.Rd
man/bruvomat-class.Rd
man/bruvomat-methods.Rd
man/clonecorrect.Rd
man/coercion-methods.Rd
man/cutoff_predictor.Rd
man/diss.dist.Rd
man/diversity_boot.Rd
man/diversity_ci.Rd
man/diversity_stats.Rd
man/figures/logo.png
man/figures/small_logo.png
man/filter_stats.Rd
man/fix_replen.Rd
man/genclone-class.Rd
man/genclone-method.Rd
man/genetic_distance.Rd
man/genind2genalex.Rd
man/genotype_curve.Rd
man/getfile.Rd
man/grapes-greater-than-grapes.Rd
man/greycurve.Rd
man/ia.Rd
man/imsn.Rd
man/incomp.Rd
man/info_table.Rd
man/informloci.Rd
man/is.clone.Rd
man/levels-methods.Rd
man/locus_table.Rd
man/make_haplotypes-method.Rd
man/missingno.Rd
man/mlg.Rd
man/mlg.filter.Rd
man/mll-method.Rd
man/mll.custom.Rd
man/mll.reset-method.Rd
man/monpop.Rd
man/old2new_genclone.Rd
man/partial_clone.Rd
man/pgen.Rd
man/plot_filter_stats.Rd
man/plot_poppr_msn.Rd
man/poppr-package.Rd
man/poppr.Rd
man/poppr.all.Rd
man/poppr.amova.Rd
man/poppr.msn.Rd
man/poppr.plot.Rd
man/poppr_has_parallel.Rd
man/popsub.Rd
man/private_alleles.Rd
man/psex.Rd
man/rare_allele_correction.Rd
man/read.genalex.Rd
man/recode_polyploids.Rd
man/rraf.Rd
man/rrmlg.Rd
man/samp.ia.Rd
man/shufflepop.Rd
man/snpclone-coercion-methods.Rd
man/snpclone-method.Rd
man/test_replen.Rd
man/unique-methods.Rd
man/upgma.Rd
man/win.ia.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
poppr.Rproj
src/.gitignore
src/Makevars
src/adjust_missing.c
src/bitwise_distance.c
src/init.c
src/mlg_clustering.c
src/mlg_counter.c
src/msn.c
src/omp_test.c
src/permut_shuffler.c
src/poppr_distance.c
tests/test-all.R
tests/testthat/genalex/test.txt
tests/testthat/test-MLG-class.R
tests/testthat/test-amova.R
tests/testthat/test-bitwise.R
tests/testthat/test-bootclass.R
tests/testthat/test-colors.R
tests/testthat/test-distpop.R
tests/testthat/test-errors.R
tests/testthat/test-filter.R
tests/testthat/test-genclone.R
tests/testthat/test-genotype_curve.R
tests/testthat/test-greyscale.R
tests/testthat/test-import.R
tests/testthat/test-incomp.R
tests/testthat/test-informloci.R
tests/testthat/test-jackia.R
tests/testthat/test-locustable.R
tests/testthat/test-make_haplotypes.R
tests/testthat/test-missing.R
tests/testthat/test-mlg.R
tests/testthat/test-msn.R
tests/testthat/test-plots.R
tests/testthat/test-polyploids.R
tests/testthat/test-poppr.R
tests/testthat/test-popsub.R
tests/testthat/test-private.R
tests/testthat/test-replen.R
tests/testthat/test-round-robin.R
tests/testthat/test-sampling.R
tests/testthat/test-snpclone.R
tests/testthat/test-trees.R
tests/testthat/test-values.R
tests/testthat/test-winia.R
tools/convertversion.sh
tools/getversion.sh
vignettes/.gitignore
vignettes/algo-concordance.tex
vignettes/algo.Rnw
vignettes/algo.pdf
vignettes/algo.tex
vignettes/authordate1.bst
vignettes/bruvo_upgma.png
vignettes/getfile.pdf
vignettes/getfile.png
vignettes/jalapeno-poppers.pdf
vignettes/jalapeno_logo.png
vignettes/jalapeno_logo.svg
vignettes/mlg.Rmd
vignettes/mod_dat.png
vignettes/msg.txt
vignettes/nancybruvo.rda
vignettes/pnas.bst
vignettes/poppr.css
vignettes/poppr_manual.Rmd
vignettes/popprlogo.png
vignettes/rootrot2.png
vignettes/the_bibliography.bib
vignettes/unmod_dat.png
