alignment_depth: Plot alignment depth.
In gschofl/porequal: Assessing the quality of high-throughput multiple sequence alignments.
Description
Usage
Arguments
Value
View source: R/alignment-depth.R
Description
Plot alignment depth.
Usage
1
alignment_depth(bamfile, reffile)
Arguments
bamfile
Path to the bam file.
reffile
Path to the reference sequence (Fasta format).
Value
Side effects. Graphs alignment depth as a line-plot and summarises the alignment depth in a
boxplot.
gschofl/porequal documentation built on May 17, 2019, 8:53 a.m.
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Description Usage Arguments Value
View source: R/alignment-depth.R
Description
Plot alignment depth.
Usage
1 | alignment_depth(bamfile, reffile)
|
Arguments
bamfile |
Path to the bam file. |
reffile |
Path to the reference sequence (Fasta format). |
Value
Side effects. Graphs alignment depth as a line-plot and summarises the alignment depth in a boxplot.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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