plot_alignment_quality: Plot alignment quality.
In gschofl/porequal: Assessing the quality of high-throughput multiple sequence alignments.
Description
Usage
Arguments
Value
Description
This function graphs the probability to recover the reference sequence from
an multiple alignment of nanopore reads.
Usage
1
plot_alignment_quality(x, smooth = TRUE, annotate = TRUE, annot.size = 4)
Arguments
x
A consensus_table.
annotate
Annotate mismatch positions.
annot.size
If annotate = TRUE, size of the annotation text.
smooth
Plot a smoothing function (gam: y ~ s(x)).
Value
Plots the probability to recover the reference sequence and summarises it in a
boxplot.
gschofl/porequal documentation built on May 17, 2019, 8:53 a.m.
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Description Usage Arguments Value
Description
This function graphs the probability to recover the reference sequence from an multiple alignment of nanopore reads.
Usage
1 | plot_alignment_quality(x, smooth = TRUE, annotate = TRUE, annot.size = 4)
|
Arguments
x |
A |
annotate |
Annotate mismatch positions. |
annot.size |
If |
smooth |
Plot a smoothing function (gam: |
Value
Plots the probability to recover the reference sequence and summarises it in a boxplot.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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