API for gthar/NucleosomeDynamics
Nuc Dyn

Global functions
NucDyn Man page
NucDyn-class Man page
NucleosomeDynamics Man page
absPos Source code
addDynamics Source code
applyDistThresh Source code
applyThreshold Man page Source code
applyThreshold,data.frame,ThresholdByType-method Man page
applyThreshold,data.frame,VariableThreshold-method Man page
applyThreshold,data.frame,character-method Man page
applyThreshold,data.frame,integer-method Man page
applyThreshold,data.frame,numeric-method Man page
buildNucDyn Source code
buildZoneRange Source code
calcDiff Source code
catcher Source code
class:NucDyn Man page
clusterizeShifts Source code
compose Source code
contained Source code
ddplyf Source code
dlplyf Source code
doBySplitting Source code
doShifts Source code
doZone Source code
dyadPos Source code
equals Source code
equalsAtDist Source code
filterEmptyRanges Source code
findHotspots Man page
findHotspots,NucDyn-method Man page
findInRange Source code
findPVals Man page Source code
findSubs Source code
getAbsolutePos Source code
getEqCovs Source code
getEqualCovs Source code
getGRLs Source code
getHsRanges Source code
getInRange Source code
getIslandLims Source code
getIslandedLims Source code
getPVals Source code
getShrinkerIdxs Source code
getSplitterIdxs Source code
getVariableThreshold Man page
hsFromCov Source code
joinZones Source code
lims2range Source code
makeVectsEqual Source code
mapplyer Source code
meanArround Source code
nitEmptyVect Source code
nmapply Source code
normSize Source code
nucleosomeDynamics Man page Source code
nucleosomeDynamics,GRanges,GRanges-method Man page
nucleosomeDynamics,IRanges,IRanges-method Man page
nucleosomeDynamics,RangedData,RangedData-method Man page
parseShifts Source code
peaksFromRanges Source code
plotCoverage Source code
plotDynamics Man page
plotDynamics,NucDyn-method Man page
preShifts Source code
ran2df Source code
ranIter Source code
ranScorer Source code
rmLongReads Source code
sameEnd Source code
sameStart Source code
selfZip Source code
separateGroups Source code
separateShifts Source code
set.a Man page
set.a,NucDyn-method Man page
set.b Man page
set.b,NucDyn-method Man page
setSizeTo Source code
shifts Source code Source code
shrinker Source code
slandSplitContinuous Source code
slandSplitDiscrete Source code
splitBySign Source code
splitWithIdxs Source code
stdSetLen Source code
subsetCov Source code
toIRanges Source code
variableThreshFromHss Man page
vectorMean Source code
weightedMean Source code
windowJoiner Source code
windowShrinker Source code
windowSplitter Source code
xddply_rep Source code
xdlply_rep Source code
xlapply Source code
gthar/NucleosomeDynamics documentation built on June 8, 2017, 5:16 p.m.