calc_marginal_llk: calc_marginal_llk

In gtonkinhill/fastbaps: A fast genetic clustering algorithm that approximates a Dirichlet Process Mixture model

calc_marginal_llk

Description

Function to calculate the log marginal likelihood of a given partition

Usage

calc_marginal_llk(sparse.data, partition)

Arguments

sparse.data	a sparse SNP data object returned from import_fasta_sparse_nt
partition	the partition for which the log marginal likelihood is to be calculated

Value

the log marginal likelihood

Examples

fasta.file.name <- system.file("extdata", "seqs.fa", package = "fastbaps")
sparse.data <- import_fasta_sparse_nt(fasta.file.name)
partition <- 1:ncol(sparse.data$snp.matrix)
calc_marginal_llk(sparse.data, partition)

gtonkinhill/fastbaps documentation built on Sept. 25, 2022, 1:56 p.m.