snp_similarity: snp_similarity
In gtonkinhill/fastbaps: A fast genetic clustering algorithm that approximates a Dirichlet Process Mixture model
View source: R/snp_similarity.R
snp_similarity R Documentation
snp_similarity
Description
Function to calculate pairwise snp similarity matrix
Usage
snp_similarity(sparse.data)
Arguments
sparse.data
a sparse SNP data object returned from import_fasta_sparse_nt
Value
A pairwise snp similarity matrix
Examples
fasta.file.name <- system.file("extdata", "seqs.fa", package = "fastbaps")
sparse.data <- import_fasta_sparse_nt(fasta.file.name)
snp_similarity(sparse.data)
gtonkinhill/fastbaps documentation built on Sept. 25, 2022, 1:56 p.m.
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View source: R/snp_similarity.R
| snp_similarity | R Documentation |
snp_similarity
Description
Function to calculate pairwise snp similarity matrix
Usage
snp_similarity(sparse.data)
Arguments
sparse.data |
a sparse SNP data object returned from import_fasta_sparse_nt |
Value
A pairwise snp similarity matrix
Examples
fasta.file.name <- system.file("extdata", "seqs.fa", package = "fastbaps")
sparse.data <- import_fasta_sparse_nt(fasta.file.name)
snp_similarity(sparse.data)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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