meta_inla: Fitting a pairwise meta-analysis model using INLA.

In gunhanb/nmainla: Network Meta-Analysis using Integrated Nested Laplace Approximations

Description

meta_inla fits a pairwise meta-analysis model using INLA

Usage

meta_inla(
  datINLA,
  fixed.par = c(0, 1000),
  tau.prior = "uniform",
  tau.par = c(0, 5),
  type = "FE",
  approach = "arm-level",
  mreg = FALSE,
  verbose = FALSE,
  inla.strategy = "simplified.laplace",
  improve.hyperpar.dz = 0.75,
  correct = FALSE,
  correct.factor = 10
)

Arguments

datINLA	An object of create_INLA_dat_pair
fixed.par	A numerical vector specifying the parameter of the normal prior density for mean treatment effect, first value is parameter for mean, second is for variance.
tau.prior	A string specifying the prior density for the heterogeneity standard deviation, options are 'uniform' for uniform prior and 'half-normal' for half-normal prior.
tau.par	A numerical vector specifying the parameter of the prior density for heterogenety stdev. var.par = c(u, l): u is lower bound and l is upper bound when var.prior = 'uniform' var.par = c(m, v): m is mean and v is variance when var.prior = 'uniform'
type	A string indicating the type of the model, options are "FE", "RE".
approach	A string indicating the approach of the model, options are "summary-level", "arm-level"
mreg	Logical indicating whether covariate(s) should be incorporated to fit a meta-regression model, default FALSE
verbose	Logical indicating whether the program should run in a verbose model, default FALSE.
inla.strategy	A string specfying the strategy to use for the approximations of INLA; one of 'gaussian', 'simplified.laplace' (default) or 'laplace', see ?INLA::control.inla.
improve.hyperpar.dz	Step length in the standardized scale used in the construction of the grid, default 0.75, see INLA::inla.hyperpar.
correct	Logical Add correction for the Laplace approximation, default FALSE, see INLA::inla.hyperpar.
correct.factor	Numerical Factor used in adjusting the correction factor if correct=TRUE, default 10, see INLA::inla.hyperpar.

Details

The following model types are supported

• FE, fixed-effect model

• RE, random effects model

Value

meta_inla returns a meta_inla object with components:

Examples

data('TBdat')
## Create the dataset suitable for INLA
TBdatINLA <- create_INLA_dat_pair(TBdat$TRT, TBdat$CON, TBdat$TRTTB, TBdat$CONTB)

## Fitting a random-effects model using arm-level approach
## Not run: 
if(requireNamespace('INLA', quietly = TRUE)){
 require('INLA', quietly = TRUE)
fit.TB.RE.INLA <- meta_inla(TBdatINLA, type = 'RE', approach = 'arm-level',
tau.prior = 'uniform', tau.par = c(0, 5))
}

## End(Not run)

gunhanb/nmainla documentation built on Feb. 27, 2021, 9:12 a.m.