findover: find overlap between target genes and hmp
In guokai8/CandiHap: Build Haplotye and Generate Figures
Description
Usage
Arguments
Value
Author(s)
Description
find overlap between target genes and hmp
Usage
1
findover(gr, hmp, upstream = 2000, downstream = 500)
Arguments
gr
GrangesInfo object or GrangeList
hmp
data.frame include hapmap information
upstream
Vectors of non-NA non-negative integers.
Defines the number of nucleotides toward the 5'
downstream
Vectors of non-NA non-negative integers.
Defines the number toward the 3'end,relative to the transcription start site
Value
OverlapInfo object
Author(s)
Kai Guo
guokai8/CandiHap documentation built on Nov. 26, 2021, 9:08 a.m.
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Description Usage Arguments Value Author(s)
Description
find overlap between target genes and hmp
Usage
1 | findover(gr, hmp, upstream = 2000, downstream = 500)
|
Arguments
gr |
GrangesInfo object or GrangeList |
hmp |
data.frame include hapmap information |
upstream |
Vectors of non-NA non-negative integers. Defines the number of nucleotides toward the 5' |
downstream |
Vectors of non-NA non-negative integers. Defines the number toward the 3'end,relative to the transcription start site |
Value
OverlapInfo object
Author(s)
Kai Guo
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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