enrich: Enrichment analysis for any type of annotation data

Description Usage Arguments Author(s)

View source: R/enrich.R

Description

Enrichment analysis for any type of annotation data

Usage

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enrich(
  df,
  annot,
  annot.info = NULL,
  minSize = 1,
  maxSize = 500,
  keepRich = TRUE,
  filename = NULL,
  gene.cutoff = 0.01,
  padj.method = "BH"
)

Arguments

df

DGE files (DESeq2 result files) or vector contains gene names

annot

annotation file for all genes

annot.info

Term of all annotation

keepRich

keep terms with high rich factor

filename

output filename

gene.cutoff

DGE singificant cutoff value

padj.method

p value adjust method

Author(s)

Kai Guo


guokai8/Enrichr documentation built on May 16, 2020, 10:24 p.m.