R/data.R

In guokai8/rcellmarker: Identify cell type based on cell markers

##' @title human
##' @description human cell markers for cell type identification
##' @format A list of data frame with five columns individually:
##' \describe{
##' \item{SYMBOL}{SYMBOL gene IDs}
##' \item{cellType}{cell type}
##' \item{tissueType}{tissue Type}
##' \item{ENTREZID}{ENTREZID gene IDs}
##' \item{REFSEQ}{REFSEQ gene IDs}
##' \item{ENSEMBL}{ENSEMBL gene IDs}
##' }
##' @examples
##' data(human)
##' head(humancells)
"humancells"
##' @title human_celltaxonomy
##' @description human cell markers (celltaxonomy; https://ngdc.cncb.ac.cn/celltaxonomy/download) for cell type identification 
##' @format A list of data frame with five columns individually:
##' \describe{
##' \item{SYMBOL}{SYMBOL gene IDs}
##' \item{cellType}{cell type}
##' \item{tissueType}{tissue Type}
##' \item{ENTREZID}{ENTREZID gene IDs}
##' \item{ENSEMBL}{ENSEMBL gene IDs}
##' }
##' @examples
##' data(human_celltaxonomy)
##' head(humancelltaxonomycells)
"humancelltaxonomycells"
##' @title mouse
##' @description mouse cell markers for cell type identification
##' @format A list of data frame with five columns individually:
##' \describe{
##' \item{SYMBOL}{SYMBOL gene IDs}
##' \item{cellType}{cell type}
##' \item{tissueType}{tissue Type}
##' \item{ENTREZID}{ENTREZID gene IDs}
##' \item{REFSEQ}{REFSEQ gene IDs}
##' \item{ENSEMBL}{ENSEMBL gene IDs}
##' }
##' @examples
##' data(mouse)
##' head(mousecells)
"mousecells"
##' @title mouse_celltaxonomy
##' @description human cell markers (celltaxonomy; https://ngdc.cncb.ac.cn/celltaxonomy/download) for cell type identification 
##' @format A list of data frame with five columns individually:
##' \describe{
##' \item{SYMBOL}{SYMBOL gene IDs}
##' \item{cellType}{cell type}
##' \item{tissueType}{tissue Type}
##' \item{ENTREZID}{ENTREZID gene IDs}
##' \item{ENSEMBL}{ENSEMBL gene IDs}
##' }
##' @examples
##' data(mouse_celltaxonomy)
##' head(mousecelltaxonomycells)
"mousecelltaxonomycells"
##' @title rat
##' @description rat cell markers for cell type identification
##' @format A list of data frame with five columns individually:
##' \describe{
##' \item{SYMBOL}{SYMBOL gene IDs}
##' \item{cellType}{cell type}
##' \item{tissueType}{tissue Type}
##' \item{ENTREZID}{ENTREZID gene IDs}
##' \item{REFSEQ}{REFSEQ gene IDs}
##' \item{ENSEMBL}{ENSEMBL gene IDs}
##' }
##' @examples
##' data(rat)
##' head(ratcells)
"ratcells"