guokai8/richR
Function Enrichment analysis and Network construction

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guokai8/richR: Function Enrichment analysis and Network construction
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API

API for guokai8/richR
Function Enrichment analysis and Network construction

Global functions
$,Annot-method Man page
$,GSEAResult-method Man page
$,richResult-method Man page
$-Annot Man page
$-GSEAResult Man page
$-richResult Man page
%<>% Man page
%>% Man page
.calculate_Enrichment_Score Man page Source code
.clean.char Man page Source code Source code
.color_scale Source code
.getIdx Source code
.get_go_dat Source code
.get_kg_dat Source code
.get_kgm.data Source code
.getdb Source code
.getdbname Source code
.getmsig Man page Source code
.getrodbname Source code
.getspeices Source code
.ggcluster_enrich Man page Source code
.ggcluster_gsea Man page Source code
.kappa Man page Source code
.kappa_cluster_internal Man page Source code
.makeGOdata Man page Source code
.makeKOMdata Man page Source code
.makeKOdata Man page Source code
.makeROdata Man page Source code
.merge_term Man page Source code
.onLoad Source code
.paste.char Man page Source code
Annot-class Man page
Annot-method Man page
GO_child Man page Source code
GSEAResult-class Man page
[,Annot,ANY,ANY,ANY-method Man page
[,Annot-method Man page
[,GSEAResult,ANY,ANY,ANY-method Man page
[,GSEAResult-method Man page
[,richResult,ANY,ANY,ANY-method Man page
[,richResult-method Man page
arrange Man page
arrange.Annot Source code
arrange.richResult Source code
as.data.frame.Annot Source code
as.data.frame.GSEAResult Source code
as.data.frame.richResult Source code
batchGSEAplot Man page Source code
buildAnnot Man page Source code
buildMSIGDB Man page Source code
buildOwn Man page Source code
colnames,Annot-method Man page
colnames,GSEAResult-method Man page
colnames,richResult-method Man page
compareGSEA Man page Source code
compareResult Man page
comparedot Man page
detail Man page Source code
detail,GSEAResult-method Man page
detail,richResult-method Man page
dim,Annot-method Man page
dim,GSEAResult-method Man page
dim,richResult-method Man page
dollar-methods Man page
enrich Man page
enrich,ANY,Annot-method Man page
enrich,ANY,data.frame-method Man page
enrich_internal Man page Source code
fast_factor Source code
filter Man page
filter.Annot Source code
filter.richResult Source code
filterPathways Man page Source code
getPathwayStats Man page Source code
getPathways Man page Source code
getann Man page Source code
getdetail Man page Source code
ggGSEA Man page Source code
ggbar Man page
ggbar,data.frame-method Man page
ggbar,richResult-method Man page
ggbar_internal Man page Source code
ggcluster Man page Source code
ggdot Man page
ggdot,data.frame-method Man page
ggdot,richResult-method Man page
ggdot_internal Man page Source code
ggheatmap Man page Source code
ggnetmap Man page Source code
ggnetplot Man page
ggnetplot,GSEAResult-method Man page
ggnetplot,data.frame-method Man page
ggnetplot,richResult-method Man page
ggnetwork Man page
ggnetwork,GSEAResult-method Man page
ggnetwork,data.frame-method Man page
ggnetwork,richResult-method Man page
ggnetwork_internal Man page
ggrich_internal Man page Source code
group_by Man page
group_by.Annot Source code
group_by.richResult Source code
head,Annot-method Man page
head,GSEAResult-method Man page
head,richResult-method Man page
hyper_bench_vector Source code
idconvert Man page Source code
msigdbinfo Man page Source code
mutate Man page
mutate.Annot Source code
mutate.richResult Source code
n Man page
name_table Source code
names,Annot-method Man page
names,GSEAResult-method Man page
names,richResult-method Man page
overlap Man page Source code
parGSEA Man page Source code
plot,GSEAResult-method Man page
plot,richResult-method Man page
plotGSEA Man page Source code
rbind.GSEAResult Man page Source code
rbind.richResult Man page Source code
reexports Man page
rename Man page
rename.Annot Source code
rename.richResult Source code
result Man page Source code
result,GSEAResult-method Man page
result,richResult-method Man page
result_detail_methods Man page
reverseList Source code
reverseList_bk Man page Source code
richCluster Man page
richCluster,data.frame-method Man page
richCluster,richResult-method Man page
richDAVID Man page Source code
richGO Man page
richGO,ANY,Annot-method Man page
richGO,ANY,data.frame-method Man page
richGO_internal Man page Source code
richGSEA Man page
richGSEA,ANY,Annot-method Man page
richGSEA,ANY,data.frame-method Man page
richGSEA_internal Man page Source code
richKEGG Man page
richKEGG,ANY,Annot-method Man page
richKEGG,ANY,data.frame-method Man page
richKEGG_internal Man page Source code
richLevel Man page
richLevel,ANY,Annot-method Man page
richLevel,ANY,data.frame-method Man page
richLevel_internal Man page Source code
richResult-class Man page
row.names,Annot-method Man page
row.names,GSEAResult-method Man page
row.names,richResult-method Man page
rownames,Annot-method Man page
rownames,GSEAResult-method Man page
rownames,richResult-method Man page
s4-accessors Man page
saveGSEAplot Man page Source code
searchPathways Man page Source code
select Man page
select.Annot Source code
select.richResult Source code
sf Source code
show,GSEAResult-method Man page
show,richResult-method Man page
showData Man page Source code
slice Man page
slice.Annot Source code
slice.richResult Source code
subset-methods Man page
summarise Man page
summarise.Annot Source code
summarise.richResult Source code
summary, Man page
summary,GSEAResult-method Man page Man page
summary,richResult-method Man page Man page
tail,Annot-method Man page
tail,GSEAResult-method Man page
tail,richResult-method Man page
uniq Source code
utilities-methods Man page
vec_to_df Man page Source code
guokai8/richR documentation built on June 10, 2025, 4:51 a.m.

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