getPathways: Get available pathways from GSEA results

In guokai8/richR: Function Enrichment analysis and Network construction

Get available pathways from GSEA results

Description

Get available pathways from GSEA results

Usage

getPathways(
  gseaRes,
  padj_cutoff = 0.05,
  pval_cutoff = 0.05,
  min_size = NULL,
  max_size = NULL
)

Arguments

gseaRes	GSEAResult object
padj_cutoff	padj cutoff for filtering (if NULL, no filtering applied)
pval_cutoff	pvalue cutoff for filtering (used if padj_cutoff is NULL)
min_size	minimum pathway size
max_size	maximum pathway size

Author(s)

Kai Guo

Examples

## Not run: 
pathways <- getPathways(gseaRes, padj_cutoff = 0.05)

## End(Not run)

guokai8/richR documentation built on June 10, 2025, 4:51 a.m.