ggGSEA: plot the gsea result

In guokai8/richR: Function Enrichment analysis and Network construction

plot the gsea result

Description

plot the gsea result

Usage

ggGSEA(term, object, gseaRes, top = 10, default = TRUE)

Arguments

term	the significant term
object	Annot object
gseaRes	GSEAResult object
top	number of top pathways to display
default	whether to use default table plot or individual enrichment plots

Author(s)

Kai Guo

Examples

## Not run: 
set.seed(123)
hsako<-buildAnnot(species="human",keytype="SYMBOL",anntype = "KEGG")
name=sample(unique(hsako$GeneID),1000)
gene<-rnorm(1000)
names(gene)<-name
res<-richGSEA(gene,object = hsako)
ggGSEA(term = res$pathway, object = hsako, gseaRes = res, default = FALSE)

## End(Not run)

guokai8/richR documentation built on June 10, 2025, 4:51 a.m.