Description Usage Arguments Examples
This function runs through a list of snpEFF annotations and returns a index vector of variants with the searched impact (LOW/HIGH/MODERATE/MODERATE) if LOW is set to TRUE and a indexlist if LOW is FALSE
1 | getEffCons(Y, con)
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Y |
a list of snpEFF annotations, con a string vector |
1 2 | getEffCons(info(vcf)$EFF, cons)
getEffCons()
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