API for guypwhunt/GEO_Explorer
GEOexplorer: an R/Bioconductor package and web application for gene expression analysis and visualisation

Global functions
addActionButtonToTable Source code
calculateAutoLogTransformApplication Source code
calculateBatchCorrection Source code
calculateCountsPerMillion Source code
calculateDifferentialGeneExpression Source code
calculateDifferentialGeneExpressionSummary Source code
calculateEachGroupsSamples Source code
calculateEachGroupsSamplesFromDataFrame Source code
calculateEachGroupsSamplesGsms Source code
calculateExclusiveColumns Source code
calculateGeoAccessionDirectory Source code
calculateKnnImpute Source code
calculateLogPValue Source code
calculateLogTransformation Source code
calculateNaOmit Source code
calculateOverlapFractions Source code
calculatePrcompPca Source code
calculatePrincompPca Source code
calculateSampleNames Source code
calculateTopDifferentiallyExpressedGenes Source code
combineExpressionData Source code
convertAdjustment Source code
convertExperimentInformation Source code
convertExpressionDataToExperimentInformation Source code
convertNaToZero Source code
convertTwoExperimentInformation Source code
convertUiSortingMethod Source code
convertUserUploadedoExperimentInformationToExperimentInformation Source code
createGeneAnnotationTable Source code
createGeoSupplementaryFilesDirectory Source code
createStudyLink Source code
deduplicatedExpressiondata Source code
deleteGeoSupplementaryFilesDirectory Source code
dowloadFile Source code
downloadGeoSupFiles Source code
enrichGenes Source code
extractDatabaseNamesFromEnrichR Source code
extractDifferenitallyExpressedGenes Source code
extractExperimentInformation Source code
extractExpressionCsv Source code
extractExpressionData Source code
extractExpressionDataFromGeoSupRawFiles Source code
extractExpressionExcel Source code
extractFileExtensions Source code
extractGeneSymbols Source code
extractGeoData Source code
extractGeoSupFiles Source code
extractPlatformGset Source code
extractPlatforms Source code
extractSampleDetails Source code
extractSampleInformation Source code
extractSampleNames Source code
extractUpregulatedGenes Source code
extractdowregulatedGenes Source code
geneEnrichmentColumnSelection Source code
geneEnrichmentPlotText Source code
getGeoObject Source code
interactive3DPrcompPcaIndividualsPlot Source code
interactive3DPrcompPcaVariablesPlot Source code
interactiveBoxAndWhiskerPlot Source code
interactiveDGEHeatMapPlot Source code
interactiveDensityPlot Source code
interactiveGeneEnrichmentBarPlot Source code
interactiveGeneEnrichmentManhattanPlot Source code
interactiveGeneEnrichmentVolcanoPlot Source code
interactiveHeatMapPlot Source code
interactiveHistogramPlot Source code
interactiveMeanDifferencePlot Source code
interactiveMeanVariancePlot Source code
interactivePrcompPcaIndividualsPlot Source code
interactivePrcompPcaScreePlot Source code
interactivePrcompPcaVariablesPlot Source code
interactivePrincompPcaIndividualsPlot Source code
interactivePrincompPcaScreePlot Source code
interactivePrincompPcaVariablesPlot Source code
interactiveQQPlot Source code
interactiveThreeDDensityPlot Source code
interactiveUmapPlot Source code
interactiveVolcanoPlot Source code
loadApp Man page Source code
loadDataSet2UiComponents Source code
loadDataSetCombinationUiComponents Source code
loadDataSetUiComponents Source code
nonInteractiveBoxAndWhiskerPlot Source code
nonInteractiveCorrelationMatrixPlot Source code
nonInteractiveDensityPlot Source code
nonInteractiveHistogramPlot Source code
nonInteractiveMeanVariancePlot Source code
nonInteractivePcaBiplotPlot Source code
nonInteractivePcaIndividualsPlot Source code
nonInteractivePcaScreePlot Source code
nonInteractivePcaVariablesPlot Source code
nonInteractiveQQPlot Source code
nonInteractiveUmapPlot Source code
nonInteractiveVennDiagramPlot Source code
nonInteractiveVolcanoPlot Source code
noninteractiveMeanDifferencePlot Source code
performExploratoryDataAnalysis Source code
plotGeneEnrichmentinformation Source code
preProcessGeneExpressionData Source code
readCsvFile Source code
readCsvFileFromGoogleDocs Source code
removeLowlyExpressedGenes Source code Source code
removeNonNumericColumnsFromExpressiondata Source code
removeWhiteSpace Source code
resetDifferentialGeneExpressionPlots Source code
resetErrorChecks Source code
resetExploratoryDataAnalaysisPlots Source code
resetGeneEnrichmentOutputs Source code
searchGeo Source code
selectTopGeneEnrichmentRecords Source code
sortGeneEnrichmentTable Source code
sourceContactUI Source code
sourceDatasetInformationUi Source code
sourceDifferentialGeneExpressionAnalysisUi Source code
sourceEnrichmentnUi Source code
sourceExampleUI Source code
sourceExploratoryDataAnalysisUi Source code
sourceGeoSearchUi Source code
sourceServer Source code
sourceSideBarUi Source code
sourceUi Source code
guypwhunt/GEO_Explorer documentation built on May 12, 2022, 8:40 p.m.