README.md

GEOexplorer

GEOexplorer is an R/Bioconductor package and web application that enables users to perform gene expression analysis.

Acknowledgements

The development of GEOexplorer was made possible because of the excellent code provided by GEO2R (https://www.ncbi.nlm.nih.gov/geo/geo2r/).

Web application

GEOexplorer is also available as a website on the following link: https://geoexplorer.rosalind.kcl.ac.uk/

Installation

Use the devtools install_github function for installation e.g.

if (!requireNamespace("devtools", quietly = TRUE))
  install.packages("devtools")

devtools::install_github("guypwhunt/GEOexplorer")

Or install from BioConductor

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GEOexplorer")

Usage

library(GEOexplorer)
loadApp()

Contributing

Pull requests are welcome.

For any changes or issues, please open an issue to discuss what you would like to change.

License

GPL-3

Authors

Guy Hunt with contributions from Fabrizio Smeraldi, Michael Barnes and Rafael Henkin.

Future Updates

Please see our Google doc for the planned updates.



guypwhunt/GEO_Explorer documentation built on May 12, 2022, 8:40 p.m.