Man pages for ha0ye/portalDS
Compute Dynamic Stability for Rodents at Portal
| add_regime_shift_highlight | Highlight specific time spans |
| compute_ccm | Run CCM on each pair of time series |
| compute_ccm_links | Identify the significant CCM links |
| compute_dynamic_stability | Dynamic stability analysis for community time series |
| compute_eigen_decomp | Compute eigen-decompositions of the Jacobian matrices |
| compute_simplex | Run univariate analysis on each time series |
| compute_smap_coeffs | Compute S-map coefficients for a community |
| compute_smap_matrices | Generate the matrices of S-map coefficients |
| compute_svd_decomp | Compute singular value decompositions of the Jacobian matrics |
| compute_total_variance | Compute total variance of the Jacobian matrics |
| compute_volume_contraction | Compute volume contraction of the Jacobian matrics |
| extract_matrix_values | Convert list of eigenvalues into long-form data.frame |
| get_smap_coefficients | Compute S-map coefficients for a given target variable |
| maizuru_block | Time series for the Maizuru Bay fish community |
| make_portal_block | Get a data.frame of Portal rodent abundances |
| make_surrogate_annual_spline | make_surrogate_annual_spline |
| norm_rescale | linear rescaling function |
| pipe | Pipe operator |
| plot_eigenvalues | Plot eigenvalues of the S-map (coefficient) matrices |
| plot_eigenvectors | Plot time-varying vector components |
| plot_indicator_values | Plot numerical metrics computed on the S-map (coefficient)... |
| plot_network | plot_network |
| plot_smap_coeffs | plot_smap_coeffs |
| plot_time_series | plot_time_series |
| simulate_3sp_food_chain | Get a data.frame of simulated abundances (3-species food... |
| simulate_LPA_flour_beetles | Get a data.frame of simulated abundances (3-stage flour... |
| simulate_resource_competition | Get a data.frame of simulated abundances (resource... |
