plot_network: plot_network

In ha0ye/portalDS: Compute Dynamic Stability for Rodents at Portal

Description

Visualize the network of interactions, created from running CCM on community time series as part of the dynamic stability analysis

Usage

plot_network(ccm_links, layout = "circle", palette = NULL,
  palette_option = "plasma", existing_graph = NULL)

Arguments

ccm_links	a data.frame containing the inferred interactions from CCM, it should have a lib_column and target_column to specify the causal links (where directed edges are from target_column to lib_column)
layout	The type of layout to create.
palette	a data.frame with the colors for each vertex; if NULL, one will be created using viridis::viridis()
palette_option	the color palette to use (see viridis::viridis() for more info)
existing_graph	a data.frame specifying the layout of nodes (e.g. from a previous call to plot_network); if NULL, one will be created

Value

a list with three elements:

plot	the ggraph object to plot or save
palette	the palette (for a future plot_network call)
graph	the graph (for a future plot_network call)

ha0ye/portalDS documentation built on March 28, 2020, 1:21 p.m.