Description Usage Arguments Value
View source: R/plotting_functions.R
plot_eigenvectors()
visualizes the dominant eigenvector(s)
from running the S-map model on the community time series
plot_svd_vectors()
visualizes the dominant SVD vector(s)
from running the S-map model on the community time series
1 2 3 4 5 6 7 | plot_eigenvectors(eigenvectors, num_values = 1, id_var = "censusdate",
add_IPR = FALSE, palette_option = "plasma", line_size = 1,
base_size = 16, plot_file = NULL, width = 6, height = NULL)
plot_svd_vectors(svd_vectors, num_values = 1, id_var = "censusdate",
add_IPR = FALSE, palette_option = "plasma", line_size = 1,
base_size = 16, plot_file = NULL, width = 6, height = NULL)
|
eigenvectors |
a list of matrices for the eigenvectors: the number of elements in the list corresponds to the time points of the s-map model, and each element is a matrix, where the columns are the eigenvectors, in descending order according to the eigenvalues |
num_values |
the number of eigenvectors to plot |
id_var |
when constructing the long-format tibble, what should be the variable name containing the time index |
add_IPR |
whether to also plot the Inverse Participation Ratio, a numerical quantity that measures how evenly the different components contribute to the eigenvector |
palette_option |
the color palette to use (see |
line_size |
the line width for the plot |
base_size |
the base font size |
plot_file |
the filepath to where to save the plot; if |
width |
width of the saved plot |
height |
height of the saved plot |
svd_vectors |
a list of matrices for the SVD vectors: the number of elements in the list corresponds to the time points of the s-map model, and each element is a matrix, where the columns are the the SVD vectors, in descending order according to the singular values |
A ggplot object of the plot
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