Files in ha0ye/rEDM
Applications of Empirical Dynamic Modeling from Time Series
.Rbuildignore
.gitignore
.lintr
.travis.yml
.zenodo.json
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/block_GP.R
R/block_lnlp_interface.R
R/ccm_interface.R
R/data_transformations.R
R/interface_helper_functions.R
R/lnlp_interface.R
R/multiview_interface.R
R/rEDM_package.R
R/statistical_tests.R
R/tde_gp.R
R/zzz.R
README.Rmd
README.md
_pkgdown.yml
binder/install.R
binder/postBuild
binder/runtime.txt
codecov.yml
data/block_3sp.rda
data/e120_invnit16.rda
data/paramecium_didinium.rda
data/sardine_anchovy_sst.rda
data/sockeye_returns.rda
data/tentmap_del.rda
data/thrips_block.rda
data/two_species_model.rda
man/block_3sp.Rd
man/block_gp.Rd
man/block_lnlp.Rd
man/ccm.Rd
man/ccm_means.Rd
man/compute_stats.Rd
man/e120_invnit16.Rd
man/figures/README-sunspots-1.png
man/figures/README-unnamed-chunk-2-1.png
man/figures/README-unnamed-chunk-3-1.png
man/figures/rEDM.png
man/figures/sunspots-1.png
man/figures/unnamed-chunk-3-1.png
man/make_block.Rd
man/make_surrogate_data.Rd
man/multiview.Rd
man/paramecium_didinium.Rd
man/rEDM.Rd
man/sardine_anchovy_sst.Rd
man/simplex.Rd
man/sockeye_returns.Rd
man/tde_gp.Rd
man/tentmap_del.Rd
man/test_nonlinearity.Rd
man/thrips_block.Rd
man/two_species_model.Rd
paper/.gitignore
paper/chicago-author-date.csl
paper/cover_letter_MEE.md
paper/figure_1.pdf
paper/figure_2.pdf
paper/figure_3.pdf
paper/presubmission_inquiry_plos_comp_bio.Rmd
paper/rEDM-paper.Rmd
paper/refs.bib
paper/wlpeerj.cls
rEDM.Rproj
src/Makevars
src/RcppExports.cpp
src/block_lnlp.cpp
src/block_lnlp.h
src/data_types.h
src/forecast_machine.cpp
src/forecast_machine.h
src/lnlp.cpp
src/lnlp.h
src/xmap.cpp
src/xmap.h
tests/testthat.R
tests/testthat/test_01_datasets.R
tests/testthat/test_02_helper_functions.R
tests/testthat/test_03_simplex.R
tests/testthat/test_04_s_map.R
tests/testthat/test_05_simplex_calculation.R
tests/testthat/test_06_block_lnlp.R
tests/testthat/test_07_ccm.R
tests/testthat/test_08_multiview.R
tests/testthat/test_09_block_gp.R
tests/testthat/test_10_tde_gp.R
tests/testthat/test_11_error_checking.R
vignettes/.gitignore
vignettes/ecology.csl
vignettes/figure_1.svg
vignettes/figure_2.svg
vignettes/figure_3.svg
vignettes/rEDM-algorithms.ltx
vignettes/rEDM-coprediction.Rmd
vignettes/rEDM-time-delay-ccm.Rmd
vignettes/rEDM.Rmd
vignettes/refs.bib
vignettes/vignette_figs/figure_1.afdesign
vignettes/vignette_figs/figure_2.afdesign
vignettes/vignette_figs/figure_3.afdesign
vignettes/vignette_figs/vignette_figure_code.R
