| addcntcat | addcntcat adds the years of experience by record to... |
| addcount | addcount adds a count of years and avC to a data.frame |
| addpoints | addpoints includes a set of points with a set size and symbol |
| cbb | cbb catch by block or sau plot |
| checkDF | checkDF checks a CPUE data.frame has all required fields |
| cleanname | cleanname tidies a vector of names by removing commas and... |
| coef.outce | coef.outce S3 method to extract the parameter values from an... |
| cvsh | cvsh plots the catch versus hours |
| diagnosticPlot | diagnosticPlot produces diagnostic plots of the regression. |
| divbb | divbb plots a count of active diver by block by year |
| dosingle | dosingle conducts a standardization of indat using the... |
| examinedata | examinedata plots the yearly distributions of catch and... |
| examinevar | examinevar tabulates and plots the properties of the input... |
| factorprop | factorprop summarizes the properties of a potential factor |
| filelist | filelist literally lists the files in a directory |
| fishery | fishery generates vectors of year, catch, effort, and cpue |
| geobb | geobb plots the naive geometric mean by year and block |
| getaav | getaav calculates annual absolute variation in catch |
| getfact | getfact extracts parameter estimates for a given factor |
| getlag | getlag is used to look for the response of cpue to previous... |
| getrmse | getrmse calculates the rmse of the input 'invar' series |
| getStand | getStand extracts major results from an outce object |
| hbb | hbb plots the hours by year by block |
| impactplot | impactplot Plots relative contribution to CPUE trend of each... |
| iscol | incol is a utility to determine is a column is present in a... |
| lefthist | lefthist draws a histogram up the y-axis |
| makecategorical | makecategorical converts given variables into categorical... |
| makeLabel | makeLabel Convert a vector of numbers or strings into a... |
| makemodels | makemodels makes a list of models as formula with their... |
| makeonemodel | makeonemodel generates a single model for use in dosingle |
| maps | maps - lists the important functions with their syntax ready... |
| plotaus | plotaus sets up a schematic map outline of the SESSF |
| plotbasic | plotbasic generates 6 plots of fisheries data and diver data |
| plotdata | plotdata generates graphs of CE and log-transformed CE data. |
| plotlag | plotlag plots the effect of a lag between two variables |
| plotLand | plotLand - puts land mass on top of a plot; covers land... |
| plotmat | plotmat plots a matrix of data |
| plotpoly | plotpoly adds a 'gridon' box to the map |
| plotpolys | plotpolys - plots a grid and fills it with relative catches |
| plotstand | plotstand plot optimum model from standLM vs Geometric mean |
| plotyrexp | plotyrexp generates a plot of count by yrs of experience... |
| qqdiag | qqdiag generates a qqplot with a histogram of residuals |
| qqplotout | qqplotout plots up a single qqplot for a lm model |
| rforcpue | rforcpue a set of functions to assist with CPUE... |
| saveresults | saveresults sends the tables generated to a text file in... |
| scaleCE | scaleCE scales an input vector of CPUE to a mean of one x... |
| sps | sps - a 11603 x 10 data.frame for testing cpue and mapping... |
| standLM | standLM Conduct a standarization on log-transformed CPUE... |
| summary.outce | summary.outce S3 function to summarize standardization... |
| tapsum | tapsum simplifies the use of tapply for summarizing variables |
| toXL | toXL copies a data.frame or matrix to the clipboard |
| turnover | turnover estimate turnover of vessels from catch by vessel by... |
| yearNA | yearNA - counts NAs per year in each numeric field in a... |
| yearprop | yearprop summarizes the properties of the year as a factor |
| yearZero | yearZero - examine listed variables for zeros and NAs |
