coef.outce: coef.outce S3 method to extract the parameter values from an...

In haddonm/rforcpue: Functions to Assist With The Analysis of CPUE Data

coef.outce S3 method to extract the parameter values from an outce object

Description

coef.outce extracts the parameter values from an outce object from a standardization (e.g. from standLM) by extending the generic 'coef' function to apply to outce objects. The output includes the log-space coefficients, the lower and upper 95 confidence intervals, the standard error of each parameter, and p the probability that the parameter is significantly different from zero. These coefficients would need to be back-transformed to return to the original scale. This would use x = exp(coef + (sterr*sterr)/2); note the bias correction

Usage

## S3 method for class 'outce'
coef(inout)

Arguments

inout

is a outce object such as produced by standLM

Value

a matrix containing the optimum model parameters,

Examples

## Not run: 
 data(sps)
 splabel = "Species"
 labelM <- c("Year","Vessel","Month")
 mods <- makemodels(labelM)
 sps1 <- makecategorical(labelM,sps)
 out <- standLM(mods,sps1,splabel)
 coef(out)

## End(Not run)

haddonm/rforcpue documentation built on Oct. 12, 2024, 11:55 p.m.