Files in hadexversum/powerHDX
Efficient Simulation of HDX-MS Data and Tools for the Statistical Analysis
.Rbuildignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/create_experimental_file.R
R/exchange_rates.R
R/isotopic_distribution.R
R/noisy_spectra.R
R/plots.R
R/power.R
R/powerHaDeX-package.R
R/simulate_HD_exchange.R
R/simulate_theoretical_spectra.R
R/statistical_tests.R
R/sysdata.rda
R/test_hadex_data.R
README.md
cran-comments.md
inst/WORDLIST
man/add_column.Rd
man/add_noise.Rd
man/add_noise_to_curves.Rd
man/add_noise_to_intensities.Rd
man/add_noise_to_one_spectrum.Rd
man/add_noise_to_one_timepoint.Rd
man/add_noise_to_single_curve.Rd
man/add_noise_to_spectra.Rd
man/calculate_hdx_power.Rd
man/calculate_peptide_mass.Rd
man/convert_hadex_data.Rd
man/create_experimental_file.Rd
man/fix_columns_names_types.Rd
man/get_F_const.Rd
man/get_HD_matrices.Rd
man/get_HD_matrices_using_markov.Rd
man/get_approx_isotopic_distribution.Rd
man/get_deuteration_curve_single_spectrum.Rd
man/get_deuteration_curves_from_spectra.Rd
man/get_deuteration_single_timepoint.Rd
man/get_exchange_constants.Rd
man/get_exchange_probabilities.Rd
man/get_exchange_rates.Rd
man/get_iso_probs_deut.Rd
man/get_noisy_deuteration_curves.Rd
man/get_observed_iso_dist.Rd
man/get_paired_spectra.Rd
man/get_pkc.Rd
man/get_poly_const.Rd
man/get_relative_mass.Rd
man/get_spectra_list.Rd
man/get_undeuterated_mass.Rd
man/make_experimental_design.Rd
man/make_noisy_spectra.Rd
man/plot_spectra.Rd
man/powerHDX-package.Rd
man/powerHaDeX.Rd
man/prepare_input_peptides.Rd
man/simulate_theoretical_spectra.Rd
man/test_hadex_data.Rd
man/test_hdx_analyzer.Rd
man/test_houde.Rd
man/test_memhdx_model.Rd
man/test_semiparametric.Rd
man/truncated_lines.Rd
powerHaDeX.Rproj
renv.lock
renv/.gitignore
renv/activate.R
src/Makevars
src/RcppExports.cpp
src/get_deuteration_matrix.cpp
tests/spelling.R
tests/testthat.R
tests/testthat/add_noise_to_curves.RDS
tests/testthat/add_noise_to_one_spectrum.RDS
tests/testthat/add_noise_to_single_curve.RDS
tests/testthat/curves_per_run.RDS
tests/testthat/dat.RDS
tests/testthat/empty_power_result.RDS
tests/testthat/experimental_file.RDS
tests/testthat/fix_columns_names_types.RDS
tests/testthat/get_deuteration_curve_single_spectrum.RDS
tests/testthat/get_deuteration_curves_from_spectra.RDS
tests/testthat/get_noisy_deuteration_curves_jointly.RDS
tests/testthat/make_noisy_spectra.RDS
tests/testthat/matrices.RDS
tests/testthat/matrices_close_times.RDS
tests/testthat/matrices_markov.RDS
tests/testthat/noisy_curves.RDS
tests/testthat/paired_spectra_ref_10.RDS
tests/testthat/power.RDS
tests/testthat/power_summarized.RDS
tests/testthat/spectra_3_states.RDS
tests/testthat/spectra_exp.RDS
tests/testthat/spectra_list.RDS
tests/testthat/spectra_list1.RDS
tests/testthat/spectra_noise_added.RDS
tests/testthat/spectra_noisy_intensities.RDS
tests/testthat/spectrum.RDS
tests/testthat/spectrum_0.RDS
tests/testthat/spectrum_pfs.RDS
tests/testthat/spectrum_rand_charge.RDS
tests/testthat/spectrum_rcpp.RDS
tests/testthat/test_create_experimental_file.R
tests/testthat/test_exchange_rates.R
tests/testthat/test_isotopic_distribution.R
tests/testthat/test_noisy_spectra.R
tests/testthat/test_power.R
tests/testthat/test_simulate_HD_exchange.R
tests/testthat/test_simulate_theoretical_spectra.R
tests/testthat/test_statistical_tests.R
tests/testthat/test_test_hadex_data.R
vignettes/.gitignore
vignettes/Example_simulation.Rmd
vignettes/Simulation_description.Rmd
vignettes/alg.png
vignettes/sim.png
