getGroupBW | R Documentation |
This function will group, summarize and export a bigwig for each group in an ArchRProject.
getGroupBW( ArchRProj = NULL, groupBy = "Sample", normMethod = "ReadsInTSS", tileSize = 100, maxCells = 1000, ceiling = 4, verbose = TRUE, threads = getArchRThreads(), logFile = createLogFile("getGroupBW") )
ArchRProj |
An |
groupBy |
A string that indicates how cells should be grouped. This string corresponds to one of the standard or
user-supplied |
normMethod |
The name of the column in |
tileSize |
The numeric width of the tile/bin in basepairs for plotting ATAC-seq signal tracks. All insertions in a single bin will be summed. |
maxCells |
Maximum number of cells used for each bigwig. |
ceiling |
Maximum contribution of accessibility per cell in each tile. |
verbose |
A boolean specifying to print messages during computation. |
threads |
An integer specifying the number of threads for parallel. |
logFile |
The path to a file to be used for logging ArchR output. |
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