getMarkers: Get Marker Features from a marker summarized experiment
In haibol2016/ArchR_debug: Analyzing single-cell regulatory chromatin in R.

getMarkers

R Documentation

Get Marker Features from a marker summarized experiment

This function will identify Markers and return a List of Features or a GRangesList for each group of significant marker features.

getMarkers(
  seMarker = NULL,
  cutOff = "FDR <= 0.1 & Log2FC >= 0.5",
  n = NULL,
  returnGR = FALSE
)

`seMarker`	A `SummarizedExperiment` object returned by `getMarkerFeatures()`.
`cutOff`	A valid-syntax logical statement that defines which marker features from `seMarker`. `cutoff` can contain any of the `assayNames` from `seMarker`.
`n`	An integer that indicates the maximum number of features to return per group.
`returnGR`	A boolean indicating whether to return as a `GRanges` object. Only valid when `seMarker` is computed for a PeakMatrix.