imputeMatrix: Impute a matrix with impute weights

In haibol2016/ArchR_debug: Analyzing single-cell regulatory chromatin in R.

Impute a matrix with impute weights

Description

This function gets imputation weights from an ArchRProject to impute a numerical matrix

Usage

imputeMatrix(
  mat = NULL,
  imputeWeights = NULL,
  threads = getArchRThreads(),
  verbose = FALSE,
  logFile = createLogFile("imputeMatrix")
)

Arguments

mat	A matrix or sparseMatrix of class dgCMatrix to be imputed.
imputeWeights	An R object containing impute weights as returned by getImputeWeights(ArchRProj). See addImputeWeights() for more details.
threads	The number of threads to be used for parallel computing.
verbose	A boolean value indicating whether to use verbose output during execution of this function. Can be set to FALSE for a cleaner output.
logFile	The path to a file to be used for logging ArchR output.

haibol2016/ArchR_debug documentation built on June 15, 2022, 5:42 p.m.