nonOverlappingGR: Retreive a non-overlapping set of regions from a Genomic...

In haibol2016/ArchR_debug: Analyzing single-cell regulatory chromatin in R.

Retreive a non-overlapping set of regions from a Genomic Ranges object

Description

This function returns a GRanges object containing a non-overlapping set regions derived from a supplied Genomic Ranges object.

Usage

nonOverlappingGR(gr = NULL, by = "score", decreasing = TRUE, verbose = FALSE)

Arguments

gr	A GRanges object.
by	The name of a column in mcols(gr) that should be used to determine how overlapping regions should be resolved. The resolution of overlapping regions also depends on decreasing. For example, if a column named "score" is used for by, decreasing = TRUE means that the highest "score" in the overlap will be retained and decreasing = FALSE means that the lowest "score" in the overlap will be retained.
decreasing	A boolean value indicating whether the values in the column indicated via by should be ordered in decreasing order. If TRUE, the higher value in by will be retained.
verbose	A boolean value indicating whether the output should include extra reporting.

haibol2016/ArchR_debug documentation built on June 15, 2022, 5:42 p.m.