saveArchRProject: Save ArchRProject for Later Usage
In haibol2016/ArchR_debug: Analyzing single-cell regulatory chromatin in R.

saveArchRProject

R Documentation

Save ArchRProject for Later Usage

Description

This function will organize arrows and project output into a directory and save the ArchRProject for later usage.

Usage

saveArchRProject(
  ArchRProj = NULL,
  outputDirectory = getOutputDirectory(ArchRProj),
  overwrite = TRUE,
  load = TRUE,
  dropCells = FALSE,
  logFile = createLogFile("saveArchRProject"),
  threads = getArchRThreads()
)

Arguments

`ArchRProj`	An `ArchRProject` object.
`outputDirectory`	A directory path to save all ArchR output and `ArchRProject` to. Default is outputDirectory of the `ArchRProject`.
`overwrite`	When writing to outputDirectory, overwrite existing files with new files.
`dropCells`	A boolean indicating whether to drop cells that are not in `ArchRProject` from corresponding Arrow Files.
`logFile`	The path to a file to be used for logging ArchR output.
`threads`	The number of threads to use for parallel execution.