Man pages for haiyueliu/Eskrate
Estimate time-dependent RNA kinetics
| calculateKineticsForEachGene | Calculate time-dependent alpha (transcription rate) and gamma... |
| estimateKinetics | Calculate kinetic rates for genes using multiple thread |
| getInput | Formatting input data by combine gene counts with cell cycle... |
| getPredictions | Calculate predicted gene expression based on estimated... |
| getPredictionSimplifiedModelForEachGene | Get predictions from estimated kinetic rates using simplified... |
| normalizeCountsToConcentration | Normalize gene expression count data to concentration |
| plotMtotalAlphaGamma | Plot the predicted gene expression, transcription (alpha) and... |
| smoothGeneProfileByPenalizedSpline | Smooth gene expression by fitting penalized splines using... |
