Man pages for haizi-zh/bioessentials
Home-made essential tools for bioinformatics project
| dot-available_colname | Find a new column name which does not conflict with existing... |
| dot-filter_by_chrom | Filter the dataset by chromosomes |
| dot-filter_by_granges | Filter the dataset by genomic ranges |
| dot-filter_by_regions | Filter the dataset by regions |
| grow_bed | Grow intervals |
| intersect_bed | Apply 'intersect' operation between two tables |
| is_gzip | Check if a file name is a gzip file |
| is_gzip_file | Check if a file name is a gzip file |
| is_remote_url | Check whether a url is remote or local |
| load_bed | Load fragment data files or BED data files |
| load_genbed | Load a data file in GENBED format |
| load_genbed_tabix | Load GENBED using tabix |
| merge_bed | Merge overlapping intervals |
| normalize_tabix_range | Make sure all ranges are valid |
| overlapping_intervals | For each interval pair, get the overlapping start and end |
| post_process_table | Set 'dt"s column names, types, and set the index |
| read_tabix_table | Load a gzipped and indexed BED-like file |
| read_table | Load a BED-format file |
| write_bed | Write data frame to disk in BED format |
| write_table | Write a 'data.table' to file |
